Steve, two things that come to mind to bond glass to plexi are vulcanized silicone and polymer epoxy. The trick to using 2 stage epoxy is to use mostly glue and very little hardener. A high ratio of glue to hardener will result in a more flexible or pliable epoxy as opposed to a brittle one found in the 10-20 minute varities. You need this to bond successfully to glass. To get epoxy to bond to glass you need to clean the glass with acetone first as well. Heres a company that specializes in making epoxy's to bond glass to metal and acrylics:
http://www.dymax.com/products/glass/glass.asp
(Sorry about the link)
Obviously epoxy is toxic so it wouldnt fare too well for the turts. I was wondering if you could seal over it with aquarium silicone? Once it completely cures can it react with water?
I might be wrong but isnt "aquarium safe" silicone just 100% pure silicone without the chemical hardeners/curing agents?

