I figured I'd update this thread rather then start a new one. So he shell is making progress. Its just taking a long time. The more she sheds the better she looks. The stuff that looks like a past fungus infection is getting better but her shell isn't clear yet.. She has some retained scutes which are making her shell look bad as its not sheding full piece yet.
So I was cleaning one of the filters today and I goofed up and a bunch of crap from the filter got shot into the tank which clouded it right up. So changed some more water and put some polishing type sponge in the filter to fix my mistake. I took her out and put her in a rubber maid tub with a tower and a light for heat while the tank cleared it self up. After an hour it was pretty decent again. Good thing because she hates being in the tub she just wanted out. Put her bank in the tank.
Heres the kicker.. She shed some BONE while she was in the tub today not scutes sizeable piece of bone from her slash. She has done this before just a small piece of dead bone I barely noticed it before just the fact the side of her shell changed a little big. This time it was large.
If you take a look on the first page of this thread you can see when I first got her. Now take a look at the picture below (The only thing I did was rotate the picture so it matched up better with the first picture)

- after shot