I posted about this awhile back and I'm ready to make an update.
The firs issue: I moved to this house one year ago. At that time, Al started retaining shed scutes. At first I didn't think it was a problem but they built up like crazy and I was getting concerned.
The second issue: a few months ago, Al had his first case of shell rot. It was fungal. We went to the vet and got some treatment advice, but the vet also told me that a high pH in the water can contribute to fungal shell rot. He advised me to keep the pH about 6 and to keep lots of plants in the water.
So, I battled the shell rot for months. I treated it topically and also struggled to lower the pH of the water. It would go away and then come back because of the water, so I would have to treat it topically again. Round and round! It went this way because you have to gradually lower pond pH, so I was having to do it little by little.
The pH has been between 6 and 7 for the past 2 weeks or so, and even before that, when it started to get l ower than 7.5 or so, I started seeing a difference. Al's shell is fungus-free, and get this: he's even shedding his scutes regularly again, with no help from me. I saw one on the bottom of the pond today, in fact.
I think the thing to take away from this is that water quality DOES affect our pets, and in ways we might not imagine. The water might be very very clean, but if the pH is too high or too low, it could open the door to an infection.

